rs33681301 SNP Detail

Summary

• ID
  rs33681301
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:18000956 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAATATTTA CTAAAGTGTG
  AAGCTTTTGT AGATTAAGAT ATAGTTGTTT TTGAAATGCT GATAAAGCCA AGCTTGGTGG
  TGCATGCCTT TAATCCCAGC ATTAGGGAGG CAGAGGCAGG CAGATTTCTG AGTTCGAGGC
  CAGCCTGGTC TACAGAGTGA GTTCCAGGAT AGCCAGGGCT ATACAGAGAA ACCCTGTCTC
  R
  AAAAACAAAA ACAAAAACAA ACAAACAAAC AAAAAGAAAT GCTGATAAGA GCATTACATG
  TGGTTATTAT TATGCAAAAT AACATAAAAC TCTGTGACAT TTTAAGCAGC CAGTTTTTAT
  TTCTTCATAC TAATTTCTAG AATTCAAATG TTCACTGTTG AACCAAATTA GAACATGTTC
  AAACTTCAAG TGATGATACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45808566	mCV23268458	ABI	CRAMUS_MOUSE	f	SNP	G	A	A	A
ss147966718	ENSMUSSNP5514194	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33681301					SNP	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:18000956 () rs orientation: forward

Symbol	Name	Function Class
Cd36	CD36 molecule	within coordinates
Rr121714	regulatory region 121714	1515 bp distal
Tssr50146	transcription start site region 50146	483 bp upstream
Tssr50147	transcription start site region 50147	376 bp upstream
Tssr50148	transcription start site region 50148	350 bp upstream
Tssr50149	transcription start site region 50149	302 bp upstream
Tssr50150	transcription start site region 50150	276 bp upstream
Tssr50151	transcription start site region 50151	257 bp upstream
Tssr50152	transcription start site region 50152	1029 bp downstream
Tssr50153	transcription start site region 50153	1056 bp downstream
Tssr50154	transcription start site region 50154	1113 bp downstream