rs33681533 SNP Detail

Summary

• ID
  rs33681533
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:105867165 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCGCCCGCA TGCATGGAAC
  GTCAATTGGA GGCTGCACGG TACCGGTCTG GTGAGCCGAG ATCCCGGGGC CTGGAAGCCC
  CTTTACCCCC AGTCTCGGGT GCCCTCTCCC GGTGCTGACC CTCTCGAGTC CTCCCAGCGC
  CGTGTGGCCC TCCTCGGCCA TACCTGGCGT CCTGGCCCTG CCCCAGCTCA GCTCCACAAA
  Y
  CCGATCTCAG ATTCAGACTG GTCCCGCCAC GGGGTTCTGT GAGGTTACCA TAGAAACAAG
  GCCTTCCATC TGACACCTTA TAACTTTGCT CTCCCCACCG TAGATGGTTC CCTTCTGCTC
  GGGGTCTCCA GCCTGAGTGG TCGCTGCTGG GTAGGTTCTC TGTGGTTTTT CAAGGATCCT
  AGTGCGGCCC CCAACGAAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46843931	NES10700437	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33681533					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46843931	NES10700437	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:105867165 () rs orientation: forward

Symbol	Name	Function Class
Atp5pb	ATP synthase peripheral stalk-membrane subunit b	Intron
Cpgi13663	CpG island 13663	within coordinates
Gm42890	predicted gene 42890	within coordinates
Rr582821	regulatory region 582821	336 bp distal
Rr582822	regulatory region 582822	84 bp distal
Rr582823	regulatory region 582823	240 bp proximal
Rr582824	regulatory region 582824	1043 bp proximal
Tssr997	transcription start site region 997	638 bp upstream
Tssr31092	transcription start site region 31092	422 bp downstream
Tssr31093	transcription start site region 31093	308 bp downstream
Tssr34944	transcription start site region 34944	612 bp upstream
Tssr34945	transcription start site region 34945	569 bp upstream
Wdr77	WD repeat domain 77	Intron