rs33681596 SNP Detail

Summary

• ID
  rs33681596
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:24009407 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCAA GCACCAGGGC AGCCTTGACA
  S
  AGTATCAAAA AGAGAAAACA AAACA                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss39565554	mCV25239219	ABI	CRAMUS_MOUSE	f	SNP	G	G	C
ss145332860	ENSMUSSNP6537383	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss325327379	CHEV_17_23927400	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs33681596					SNP	G	G	C	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:24009407 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8694	CpG island 8694	18 bp proximal
D930048G16Rik	RIKEN cDNA D930048G16 gene	271 bp upstream
Gm52285	predicted gene, 52285	within coordinates
Rr339285	regulatory region 339285	within coordinates
Srrm2	serine/arginine repetitive matrix 2	99 bp upstream
Tssr142954	transcription start site region 142954	192 bp upstream
Tssr146666	transcription start site region 146666	520 bp upstream