rs33682004 SNP Detail

Summary

• ID
  rs33682004
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:42773152 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGACGTGTGC TTTTCCCAGG AGGAGGGAAA GAAGAAAGGC
  CTCACCGCTG CCCCCCCCCC CCCACAATCC CTCCTAATCC ATGACTACCC TGCCTGCCTG
  Y
  AGAGCTCCAC TCACCCTGTG AAAGCCTGCT GGCTTCCTTG GAGCACACTC TAGAAAGTTT
  CCTTACGACC ACACCCTTAA GACCTTAAGA CCACACCCT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46305885	mCV23034882	ABI	CRAMUS_MOUSE	f	SNP		T	C					C		T
ss52008978	NES15031337	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	C	C		C	T	C	C	C	C	C	C	C
ss136386066	ENSMUSSNP5801646	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33682004					SNP	T	T	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52008978	NES15031337	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:42773152 () rs orientation: forward

Symbol	Name	Function Class
Gm55338	predicted gene, 55338	195 bp downstream
Gm67530	predicted gene, 67530	within coordinates
Grik4	glutamate receptor, ionotropic, kainate 4	within coordinates
Rr677285	regulatory region 677285	1282 bp distal
Rr677286	regulatory region 677286	327 bp distal
Rr677287	regulatory region 677287	1546 bp proximal