rs33682114 SNP Detail

Summary

• ID
  rs33682114
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:105840501 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAAAGATCC TGTAAGCCAT
  AAGAGTTGCT TGTATACATT TTCACACATG AATGCCAGAA GATCGAGGAA AGTTCATTTC
  TAGGGAAGAG TTTATTATTT AACGCCCTCC CCCCACCCCC GAAGTTTACT GACACCAGTA
  TGACCTCATC ACCAACAGCA AGGCCTTTAT AAATTCCATC TGGCCTGATG AAGGAGATGA
  M
  GCTGAGATAG AAAAATGAAG AGTTACCTGT CAAAATTAAA CAGTGGGAAC TCAAGTGTAT
  TCAGAGCATT GAAATACCTT TGGAGGGAAC AGAAGATTAA TATATATATA TTTTATTTTT
  AAAAAAGATT TATCTATCAG TGACTGCATA TCAAGTGACT TCTTTTGTGA TTGGGTTACC
  TCACTAAGGA TGATATCCTC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46843502	NES10701427	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	C	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33682114					SNP	A	A	A	A	A	A	A	A	A	A	A	A	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46843502	NES10701427	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:105840501 () rs orientation: forward

Symbol	Name	Function Class
I830077J02Rik	RIKEN cDNA I830077J02 gene	521 bp upstream
Rr582817	regulatory region 582817	532 bp distal
Rr582818	regulatory region 582818	168 bp distal
Rr582819	regulatory region 582819	1926 bp proximal
Tssr34937	transcription start site region 34937	1908 bp upstream
Tssr34938	transcription start site region 34938	563 bp upstream
Tssr34939	transcription start site region 34939	555 bp upstream
Tssr34940	transcription start site region 34940	538 bp upstream
Tssr34941	transcription start site region 34941	506 bp upstream
Tssr34942	transcription start site region 34942	474 bp upstream