rs33682176 SNP Detail

Summary

• ID
  rs33682176
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:37166348 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCTGGGTTCC TCAAAGGCAA ATCCGGATCC TCCAAATACA
  CAGATAAGAC TTGGAGGCAC TCCACAGGTA CCCGCTTGTG CGCTTGTGTT TGCAGATACG
  R
  GGTGGCAAAC CAAAAAGGAT GAAGACTCCT AGGCACCCTG TTTGTTCTTC ACCGGGGTTA
  GACAGAAGTC TGGGCTAATG TGGAATTAAT AGTTCTGTG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46305711	mCV24902294	ABI	CRAMUS_MOUSE	f	SNP	G	G					G		A
ss50674834	NES14008187	PERLEGEN	MM_PANEL2	f	SNP		G	A	G	G	G		G	A	G	A	G	A	A	A
ss136309787	ENSMUSSNP4765648	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G							A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33682176					SNP	G	G	A	G	G	G	G	G	A	G	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50674834	NES14008187	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:37166348 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21569	CpG island 21569	120 bp proximal
Gm10177	predicted gene 10177	1871 bp downstream
Gm48081	predicted gene, 48081	446 bp upstream
Gm65989	predicted gene, 65989	1687 bp downstream
Rr676656	regulatory region 676656	within coordinates
Rr676657	regulatory region 676657	352 bp proximal
Rr676658	regulatory region 676658	457 bp proximal
Rr676659	regulatory region 676659	676 bp proximal
Rr676660	regulatory region 676660	984 bp proximal
Slc37a2	solute carrier family 37 (glycerol-3-phosphate transporter), member 2	within coordinates
Tssr88821	transcription start site region 88821	305 bp downstream
Tssr88822	transcription start site region 88822	329 bp downstream
Tssr88823	transcription start site region 88823	351 bp downstream
Tssr88824	transcription start site region 88824	377 bp downstream
Tssr88825	transcription start site region 88825	392 bp downstream
Tssr88826	transcription start site region 88826	478 bp downstream
Tssr88827	transcription start site region 88827	571 bp downstream
Tssr88828	transcription start site region 88828	594 bp downstream
Tssr88829	transcription start site region 88829	617 bp downstream
Tssr88830	transcription start site region 88830	633 bp downstream
Tssr88831	transcription start site region 88831	678 bp downstream