rs33682745 SNP Detail

Summary

• ID
  rs33682745
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:46037286 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCAGC TCACCTGGTG CATGGAGTCC
  Y
  GGTTAGCCTG TGGAGGCAGA GGCCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss39565565	mCV24294363	ABI	CRAMUS_MOUSE	f	SNP		T	T					C		T
ss60259589	NES15753062	PERLEGEN	MM_PANEL2	f	SNP	T		T	C	C	T	C		C	T	C	C		C	T	C	C		C
ss145695457	ENSMUSSNP2319057	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T							T
ss325403928	CHEV_17_45863309	CHEVERUD	SCREENING_POP	f	SNP													T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33682745					SNP	T	T	T	C	C	T	C	C	C	T	C	C	T	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60259589	NES15753062	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:46037286 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9206	CpG island 9206	1920 bp distal
Gm35456	predicted gene, 35456	within coordinates
Rr331486	regulatory region 331486	1486 bp distal
Rr331487	regulatory region 331487	515 bp proximal
Rr339880	regulatory region 339880	1685 bp distal
Rr339881	regulatory region 339881	within coordinates