rs33682997 SNP Detail

Summary

• ID
  rs33682997
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:46248649 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TAGGCTCTCA GTGGCCTCTG TGGACAGAGG CTATGTCTGT CAGATGTTAT AACTGGCTCA
  GGAGGTGACC TGTGGCCTAG GAGTCTACTC CATGCTCTGG GCATTGCCCT CCATTTGGGT
  GTGCAAAGCA GCAGGCCCCA CCTTGCATTG TAGAGCATGC CTATGGGAGT GTGGGGTGCA
  CTGGGTGCTT TAAAGAGCTA TGTGGCTCTG TGAGACAGTT AGCAAGAGTT TATTAGTAGT
  ATTCTTTTTA GATAGACCAG GCTGGCCTTG AACTCCTGAC GATCCACCTG CCCCTGCCTT
  Y
  TCAGTGCCAG GATCAAAGGC ATGTGCCACC ATACCCTGCT TCAGTACACT GTTTATTTTT
  AATTTGTAAC AACAGGAGCA TGCTGAGAGT TTTGTCCTTT AAGCATTTCT GGAGGAAGCG
  TGCATACAAA CACTAATAAA CAAAGAGGAT TAAGGGCCGG ACTCCATGGG GGACTTGGCT
  CCTGAAGCAG AAGGAGGGTA TGTGTGCCCG CATGTCATTT GTTGGACTCT GTCATTCAGC
  TGAGGCACCT CGGGAACAGC AATGCTGTTT CTGAGTTGGT TCAGAAAGCG TGGGTTCATG
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46306000	mCV25177595	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33682997					SNP	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:46248649 () rs orientation: forward

Symbol	Name	Function Class
Rr383308	regulatory region 383308	238 bp upstream
Rr678124	regulatory region 678124	90 bp proximal
Rr678125	regulatory region 678125	591 bp proximal