rs33683786 SNP Detail

Summary

• ID
  rs33683786
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr17:26197630 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TACCT CAAGTGCTGT CCTCGCTTTG
  Y
  CGCTACTCTA GAGAATACTC CACTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss39565776	mCV23810080	ABI	CRAMUS_MOUSE	f	SNP		T							C
ss60255357	NES15700114	PERLEGEN	MM_PANEL2	f	SNP	T		C	T	T	T	C	C	C	C	C		C	C	T	C		C
ss145396000	ENSMUSSNP4882942	ENSEMBL	ENSEMBL_Sanger	f	SNP		T							C
ss325339349	CHEV_17_26115601	CHEVERUD	SCREENING_POP	f	SNP												C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33683786					SNP	T	T	C	T	T	T	C	C	C	C	C	C	C	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60255357	NES15700114	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:26197630 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Capn15	calpain 15			Intron
				Noncoding-Transcript-Variant
Rr523724	regulatory region 523724			1351 bp distal
Rr523725	regulatory region 523725			183 bp proximal
Rr523726	regulatory region 523726			1227 bp proximal
Tssr146884	transcription start site region 146884			1231 bp downstream
Tssr146885	transcription start site region 146885			1280 bp downstream