rs33683996 SNP Detail

Summary

• ID
  rs33683996
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:75183976 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTCTGGTTTT AAACGAAATT GCTGAAGAGC TTTCCAAACA
  TTACTGTAGC TATTGTCGTT TGCCCCCCCC CCTCGGCCCC CCCCCATCCT CTCCTTTGCA
  Y
  GGTTGATCAT TCCATCCTGA GAGTTCAACC CCCAGCTCTT CCCTTCATTA GCTTGGTGGA
  GGGGAACAGT AACCTCAACT CGGGGTCGCA CCTTCCCCG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss45308988	mCV25093971	ABI	CRAMUS_MOUSE	f	SNP	C	T
ss146766297	ENSMUSSNP5372759	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss320350048	CHEV_2_75191689	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs33683996					SNP	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:75183976 () rs orientation: forward

Symbol	Name	Function Class
Gm39857	predicted gene, 39857	within coordinates
Igs15	intergenic site 15	within coordinates
Rr559469	regulatory region 559469	1716 bp distal
Rr559470	regulatory region 559470	647 bp distal
Rr559471	regulatory region 559471	896 bp proximal