rs33684120 SNP Detail

Summary

• ID
  rs33684120
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:105868399 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAGGGAAGC CAGTGCCATC
  TTTTGGCCTC CATGGGCACT GCATGCACTT GATGAATAGA CATAGATGAA AGCAAAACAC
  CTGTGCGCTT AAAATCAGAA CATCTCTCTC ACATACAAAC ATTCTTAAGT GTTAGGTAGA
  ACATGGCAAT TGAAAAGTAG AATGTTAGTG AATGAGACTG ACAGTTGAAA TTAGAATATT
  K
  CAAGACAGTG AGTGGCTGCT CTTCCAGAGC TCATGAGTTC ACATCCCAGC AACCACATGG
  TGGTTTACAA CCATTTGTAA TTGGATCAGA TGGCCTCTTC TGGTTTGTCA GTGACAGTGT
  GATCATATAT ATAATATAAA TCTTAGAAGT ATTTCAAGAC ATTTTATGTA AGCAAATATT
  TACTAGTGTC TGCATACCTG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46843958	NES10700228	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33684120					SNP	T	T	T	T	T	T	T	T	T	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46843958	NES10700228	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:105868399 () rs orientation: forward

Symbol	Name	Function Class
Atp5pb	ATP synthase peripheral stalk-membrane subunit b	1820 bp upstream
Cpgi13663	CpG island 13663	1016 bp distal
Gm42890	predicted gene 42890	within coordinates
Rr582821	regulatory region 582821	1570 bp distal
Rr582822	regulatory region 582822	1318 bp distal
Rr582823	regulatory region 582823	494 bp distal
Rr582824	regulatory region 582824	170 bp distal
Tssr997	transcription start site region 997	1872 bp upstream
Tssr31092	transcription start site region 31092	1656 bp downstream
Tssr31093	transcription start site region 31093	1542 bp downstream
Tssr34944	transcription start site region 34944	1846 bp upstream
Tssr34945	transcription start site region 34945	1803 bp upstream
Wdr77	WD repeat domain 77	Intron