rs33684375 SNP Detail

Summary

• ID
  rs33684375
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:13570646 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAGCATAAA TGTAAACAAA
  ATCCAGCACA TATAAGAAGG ATTATAAAGC TTATTTATAC ATAACAATTT AATTGGGTCA
  ACACAAGAAT CAACGCAATT CAGGGCATCA ATAGATTAAA GGCTGCTAGC ATCTGACCAT
  TTCAAGACAC GCAGAAAAAA AGCATTTGAT GAAATTCACT TCCTATTCAC ACTTATTATA
  Y
  ACAATGTTAT TTTCTAGATG CTTTATCTAT CACAATAAAG GCAATAAAAT GAAAAAGAAA
  CACAACAGAA TTATGGGCTG GCAAGATGGC TCAGTGAGTA AAGGCAATTG CTCAGAAGCC
  TGACTAGCTG AGGTCAATCC CTGAAACCCA TATAGTGAGG AGAACCAACT ACCATAAGTT
  GTCCACTGAC TTCCATGTGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46843665	NES10974968	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33684375					SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46843665	NES10974968	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:13570646 () rs orientation: forward

Symbol	Name	Function Class
Cask	calcium/calmodulin dependent serine protein kinase	within coordinates
Rr5428	regulatory region 5428	1355 bp proximal
Rr6709	regulatory region 6709	692 bp proximal