rs33684381 SNP Detail

Summary

• ID
  rs33684381
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:13570905 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACACAACAG AATTATGGGC
  TGGCAAGATG GCTCAGTGAG TAAAGGCAAT TGCTCAGAAG CCTGACTAGC TGAGGTCAAT
  CCCTGAAACC CATATAGTGA GGAGAACCAA CTACCATAAG TTGTCCACTG ACTTCCATGT
  GCTCGCAACA AACAAACAAA CAAACAAACA AACAAACGAA TGAATGAATA AATGAATGAA
  W
  GTAATTTAAA AAAGAACTTG TATGGAATGA AACATCATCA TACGCAAACA ATACGATCAT
  GTATTCAGAA AATCCAAATG ACTGTACTAA TTACCAGAAT TAAAGCCTGA TGAATGGAAA
  TGGATAGCTA GTACCTAAGA ACCAAACTAA TAAAACTTAC TTAACGAAGC TGTTATCATT
  ATCTAACATG TATTGATCAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46843671	NES10974963	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33684381					SNP	T	T	T	T	T	T	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46843671	NES10974963	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:13570905 () rs orientation: forward

Symbol	Name	Function Class
Cask	calcium/calmodulin dependent serine protein kinase	within coordinates
Rr5428	regulatory region 5428	1096 bp proximal
Rr6709	regulatory region 6709	433 bp proximal