rs33685013 SNP Detail

Summary

• ID
  rs33685013
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:18119089 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTTGT GGTTTTTCTT TATAGGCAAA
  Y
  GAAGCTTCTG CCAAAATCAC TAACA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss39566083	mCV22802869	ABI	CRAMUS_MOUSE	f	SNP	T	T	T					C		T
ss60545652	NES16557450	PERLEGEN	MM_PANEL2	f	SNP	T		T	C	T	C	C		C	T	C	C		C	C	C	C		T
ss145228003	ENSMUSSNP6953229	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T							T
ss325312428	CHEV_17_18035791	CHEVERUD	SCREENING_POP	f	SNP													T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33685013					SNP	T	T	T	C	T	C	C	C	C	T	C	C	T	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60545652	NES16557450	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:18119089 () rs orientation: forward

Symbol	Name	Function Class
Rr329600	regulatory region 329600	312 bp proximal
Rr336961	regulatory region 336961	496 bp proximal
Rr343850	regulatory region 343850	1778 bp proximal
Rr343851	regulatory region 343851	1937 bp proximal
Tssr142835	transcription start site region 142835	800 bp upstream