rs33685582 SNP Detail

Summary

• ID
  rs33685582
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:156714241 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCAGGGTAGG GAGATACCAC CCATAGACGA AGAATAAACT
  GGAACATGGG TGTGAGGGGA GAGCCTGCGG CCTCAGAGCT TACGGTTTGT GTTTGGTGTT
  K
  ATTCCCCTCA CTCCAGATTC TGCCTGATCA ATGCAGGAGT TCTGTATCTC TACTTCAGTA
  ACTACCTACA AATCGACGAG GAAGAATATG GGGGCACGT                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss45309211	mCV25126966	ABI	CRAMUS_MOUSE	f	SNP	G	T
ss148084871	ENSMUSSNP6376546	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T
ss320582498	CHEV_2_156698057	CHEVERUD	SCREENING_POP	f	SNP			T	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs33685582					SNP	G	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:156714241 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rab5if	RAB5 interacting factor			Intron
				Noncoding-Transcript-Variant
Rr568377	regulatory region 568377			1462 bp distal
Rr568378	regulatory region 568378			1249 bp proximal
Rr568379	regulatory region 568379			1502 bp proximal
Sla2	Src-like-adaptor 2			1830 bp downstream
Tssr21217	transcription start site region 21217			177 bp upstream