rs33685681 SNP Detail

Summary

• ID
  rs33685681
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:45315442 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCAACCTGG ACCTTCCAGC
  TCTGCTCTTC CCTTTCTGTG TGTCTTCCCT TGCTCTCAGT TTTTCGGGTC TCTGGTGGGC
  TATGGCACAA GCCCCTCTAG GTGTGGTTGG GGGAAGCAAA TGTTCAGCCT TAGTTTCTTC
  ACCTGTCAAA TGGAACTACT GGAGATTATT AGATGGGGGC CGTGAGTGCT GAGAGCCTGG
  Y
  GTGTGGGGGC AGACTCTCAC AGGGCGGGGC TGCTGTCCTT CTGTGTGAGT GTGTGTTGCT
  GGGCTCCGGA AGCTCGGGAG AGCTGCGTGA GTGCTTTTAA GCCATCCAGC CAGGGCTGGT
  CTCTGCTCTT ACCACTTAGC AGGGAGTGGC TGGCTCTCCG ATGGTACCAG CAAACAAAAG
  GCTAATGCCT GCCATTTATC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46306129	mCV25163681	ABI	CRAMUS_MOUSE	f	SNP	T	C	C	C
ss136411228	ENSMUSSNP2559550	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33685681					SNP	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45315442 () rs orientation: forward

Symbol	Name	Function Class
Fxyd2	FXYD domain-containing ion transport regulator 2	within coordinates
Gm68814	predicted gene, 68814	within coordinates
Rr195107	regulatory region 195107	1159 bp proximal
Rr206351	regulatory region 206351	1358 bp proximal
Rr209195	regulatory region 209195	559 bp proximal
Tssr84783	transcription start site region 84783	1570 bp downstream
Tssr84784	transcription start site region 84784	1518 bp downstream
Tssr84785	transcription start site region 84785	986 bp downstream
Tssr84786	transcription start site region 84786	955 bp downstream
Tssr84787	transcription start site region 84787	934 bp downstream
Tssr84788	transcription start site region 84788	903 bp downstream
Tssr84789	transcription start site region 84789	876 bp downstream
Tssr84790	transcription start site region 84790	1791 bp upstream
Tssr84791	transcription start site region 84791	1922 bp upstream
Tssr84792	transcription start site region 84792	1970 bp upstream