rs33685828 SNP Detail

Summary

• ID
  rs33685828
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:24658539 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCCGATGCCC CCTCTGGCCT CCAAAAGCAC TTCATATGAA
  GCATGTGGTG CATACACACA TACATGCAAA TATACATACA TGTGTATGTA CATATACAGT
  R
  AGTGTGTGTG TGTGTGTGTG TGTGTTCTAA CAGTCCCACT AGCTGGGTGG GGTAGGTCTG
  TCATTACAGT GCTTCCCATG CTATGGTGAG AACTTGAAA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39565210	mCV25112465	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33685828					SNP	A	A	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:24658539 () rs orientation: forward

Symbol	Name	Function Class
Dnase1l2	deoxyribonuclease 1-like 2	515 bp downstream
Eci1	enoyl-Coenzyme A delta isomerase 1	249 bp downstream
Rr329767	regulatory region 329767	1739 bp distal
Rr329768	regulatory region 329768	within coordinates
Rr329769	regulatory region 329769	1462 bp proximal
Rr337043	regulatory region 337043	within coordinates
Rr340709	regulatory region 340709	1955 bp distal
Rr340710	regulatory region 340710	662 bp proximal
Tssr146730	transcription start site region 146730	830 bp downstream