rs33686088 SNP Detail

Summary

• ID
  rs33686088
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:26751363 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCTGT GTGAATGCTA TTTTCTGAGG
  Y
  CTTGGGGTCT CCCAGGTGAA ATGAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss39565909	mCV22900252	ABI	CRAMUS_MOUSE	f	SNP	C	C	C					T
ss60554850	NES16569796	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	T	T		C	C	T	T		T	C	T	T		T
ss145405324	ENSMUSSNP3262429	ENSEMBL	ENSEMBL_Sanger	f	SNP			C
ss325342257	CHEV_17_26669334	CHEVERUD	SCREENING_POP	f	SNP													T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33686088					SNP	C	C	C	C	C	T	T	T	C	C	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60554850	NES16569796	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:26751363 () rs orientation: forward

Symbol	Name	Function Class
Gm34606	predicted gene, 34606	within coordinates
Tssr143239	transcription start site region 143239	550 bp downstream
Tssr143240	transcription start site region 143240	490 bp upstream
Tssr143241	transcription start site region 143241	506 bp upstream
Tssr143242	transcription start site region 143242	520 bp upstream
Tssr143243	transcription start site region 143243	545 bp upstream
Tssr143244	transcription start site region 143244	576 bp upstream
Tssr143245	transcription start site region 143245	1736 bp upstream
Tssr146959	transcription start site region 146959	692 bp upstream
Tssr146960	transcription start site region 146960	225 bp downstream
Tssr146961	transcription start site region 146961	248 bp downstream
Tssr146962	transcription start site region 146962	276 bp downstream
Tssr146963	transcription start site region 146963	321 bp downstream