rs33686246 SNP Detail

Summary

• ID
  rs33686246
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:13574703 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTAGAGAAG GCTATTTGAG
  ATGTATACAT TTAAATAAAT TAAGATGCTA CAGTCCAGAT TTTCATTGTA TGATAGGAGA
  CAGAGACATT TTTGCTTAAG TGGCAACTTC GCTGGTAAGT AATAATTAGT TCCACTTAGT
  TAATGAATTT CACACACATT CTCTTCCCCA TGAATTCATA TCAGACAAAA AAATTAAAGT
  Y
  AAAAAGAGCA GTTCCAGCCT ATTATCTCCT TTGTAAGCTT CAAAAATACA AACTGAGAAT
  GTTATTTTAA AAGATAAAAA AACTATTGTT TTCATGTCAG ACGTGTTTAA AATCCATATT
  TAATTACTGT AAAATTCTCC CTGTGGTATA TGTAATCACA CTATAATAAG GTAATTAAAA
  TTCCTTAGCC AGCCAATTTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46843686	NES10974846	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33686246					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46843686	NES10974846	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:13574703 () rs orientation: forward

Symbol	Name	Function Class
Cask	calcium/calmodulin dependent serine protein kinase	within coordinates
Rr2973	regulatory region 2973	1698 bp proximal
Rr5428	regulatory region 5428	1903 bp distal
Rr10464	regulatory region 10464	1673 bp proximal