rs33686471 SNP Detail

Summary

• ID
  rs33686471
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr17:7262400 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTTGGATT CTTTGTGTTT
  GCATATGAGC ATACACTATG AATTGCTTAG GTCACTGGCT TGGAGGCACA GACACTTGAC
  CTCCAAGGCC TCAGCACAGG GCAGAGCACA AGTCTGAAAA AGTGCATCTA ACATCATGGA
  GTTGGAGGGG AAGCACATTG GTTCTTTGCT TTTCATGTAA ACTATGTGAC ACGGGAAATA
  R
  TGTCCCTTCT TACTGACTGA GAAGGGCGTG TGCAGTGTAG ATGCCTTCAA CTCTGGATTG
  TCTGTTTTCT GTCTGTCACA GAGACATATG TCTCTCCCAA AGCTTAAATG CTACCTGGGC
  TTACAGGCGA GTTCGCAGAT GGGCACTGTT ACTCTGTCCT GTTGACAGTG TATCAAGTAA
  GCTGGCAGCT CTGTCTGCAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48343607	NES12250541	PERLEGEN	MM_PANEL2	f	SNP	A		A	G	G		A	G	G	A	G	G	A
ss145100604	ENSMUSSNP4336206	ENSEMBL	ENSEMBL_Sanger	f	SNP		A				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33686471					SNP	A	A	A	G	G	G	A	G	G	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48343607	NES12250541	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:7262400 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm49721	predicted gene, 49721			Intron
Rnaset2b	ribonuclease T2B			Intron
				Noncoding-Transcript-Variant
Rr521500	regulatory region 521500			592 bp proximal
Tssr146343	transcription start site region 146343			1736 bp upstream