rs33686598 SNP Detail

Summary

• ID
  rs33686598
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:105865914 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCACGAGTT GAGTCTTACT
  GACGGATTAG AGGATGGAGC TACTGTGTAG CTGTCTCTAG GACTAGGGTT GTTACTGTGA
  TCTCCACAAA GTTATCCACT GTCACATTAT GTGATCATCA ACACAAGCAT TTACGAAGCC
  ATATGTGTTT TCGGCCTCCT GATATGGTTA ATAAAAGATG GAAATCTGGA AGACACCCAA
  R
  ACAATAGGTT TTATTTTGCT GTATTTAACC AGATCTGTCC TTGGGGGTAA GTAAGCCAGT
  AACTTGGTTG TGTGTCGCTG AAGGTCACAA CGAGGGGTGA GCCTCTCTTT GGTGTTTGTC
  AGAGGAAGGA ACAGGATCAT GTTCAAGGCA ATTAGAAGAA CAAACGTCCG AATGAGTATG
  CAAGCTGGCT AACGTGAAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46843889	NES10700416	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33686598					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46843889	NES10700416	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:105865914 () rs orientation: forward

Symbol	Name	Function Class
Atp5pb	ATP synthase peripheral stalk-membrane subunit b	Intron
Cpgi13663	CpG island 13663	177 bp proximal
Gm42890	predicted gene 42890	905 bp upstream
Rr582821	regulatory region 582821	281 bp proximal
Rr582822	regulatory region 582822	1146 bp proximal
Rr582823	regulatory region 582823	1491 bp proximal
Tssr997	transcription start site region 997	601 bp downstream
Tssr31092	transcription start site region 31092	812 bp upstream
Tssr31093	transcription start site region 31093	855 bp upstream
Tssr34944	transcription start site region 34944	614 bp downstream
Tssr34945	transcription start site region 34945	654 bp downstream
Wdr77	WD repeat domain 77	900 bp upstream