rs33687120 SNP Detail

Summary

• ID
  rs33687120
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:45824982 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTCCC ACCCACAAGG GGGCTTTTCC
  Y
  CTTGATCACT AATTGAGAAA ATGCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45808975	mCV22817578	ABI	CRAMUS_MOUSE	f	SNP	T	C	T	C
ss148353169	ENSMUSSNP3150869	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33687120					SNP	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:45824982 () rs orientation: forward

Symbol	Name	Function Class
1600023N17Rik	RIKEN cDNA 1600023N17 gene	1062 bp downstream
Cpgi15841	CpG island 15841	1605 bp proximal
Rr367838	regulatory region 367838	1942 bp upstream
Rr611093	regulatory region 611093	706 bp proximal
Rr611094	regulatory region 611094	850 bp proximal
Rr611095	regulatory region 611095	1255 bp proximal
Rr611096	regulatory region 611096	1789 bp proximal