rs33687534 SNP Detail

Summary

• ID
  rs33687534
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:105866074 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATATGGTTA ATAAAAGATG
  GAAATCTGGA AGACACCCAA AACAATAGGT TTTATTTTGC TGTATTTAAC CAGATCTGTC
  CTTGGGGGTA AGTAAGCCAG TAACTTGGTT GTGTGTCGCT GAAGGTCACA ACGAGGGGTG
  AGCCTCTCTT TGGTGTTTGT CAGAGGAAGG AACAGGATCA TGTTCAAGGC AATTAGAAGA
  R
  CAAACGTCCG AATGAGTATG CAAGCTGGCT AACGTGAAGG AAAACAGCAA TTTTTGGCTT
  GACGCTAGGA AATGGAAAGA GAATAAGACG TGGTGACACT CACCCTGGAC CTAGGGCGGC
  CGCGTTCTTC AGACACGGGG CTGGAAATAC ACAAGACGGA GGTTAGCAAA GTCAAGGAGA
  AATCGCGTTT CTACCTTCCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss46843895	NES10700418	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs33687534					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46843895	NES10700418	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:105866074 () rs orientation: forward

Symbol	Name	Function Class
Atp5pb	ATP synthase peripheral stalk-membrane subunit b	Intron
Cpgi13663	CpG island 13663	17 bp proximal
Gm42890	predicted gene 42890	745 bp upstream
Rr582821	regulatory region 582821	121 bp proximal
Rr582822	regulatory region 582822	986 bp proximal
Rr582823	regulatory region 582823	1331 bp proximal
Tssr997	transcription start site region 997	441 bp downstream
Tssr31092	transcription start site region 31092	652 bp upstream
Tssr31093	transcription start site region 31093	695 bp upstream
Tssr34944	transcription start site region 34944	454 bp downstream
Tssr34945	transcription start site region 34945	494 bp downstream
Wdr77	WD repeat domain 77	740 bp upstream