rs33688172 SNP Detail

Summary

• ID
  rs33688172
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:105866548 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCGG GCTCCGTGTC CCTGTGACCC
  Y
  GACCCGAGCC TGTCAGGGGC AGGAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46843913	NES10700427	PERLEGEN	MM_PANEL2	f	SNP	C	T	C	C	C	T	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33688172					SNP	C	T	C	C	C	T	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46843913	NES10700427	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:105866548 () rs orientation: forward

Symbol	Name	Function Class
Atp5pb	ATP synthase peripheral stalk-membrane subunit b	mRNA-UTR
Cpgi13663	CpG island 13663	within coordinates
Gm42890	predicted gene 42890	271 bp upstream
Rr582821	regulatory region 582821	within coordinates
Rr582822	regulatory region 582822	512 bp proximal
Rr582823	regulatory region 582823	857 bp proximal
Rr582824	regulatory region 582824	1660 bp proximal
Tssr997	transcription start site region 997	21 bp upstream
Tssr31092	transcription start site region 31092	178 bp upstream
Tssr31093	transcription start site region 31093	221 bp upstream
Tssr34944	transcription start site region 34944	within coordinates
Tssr34945	transcription start site region 34945	20 bp downstream
Wdr77	WD repeat domain 77	266 bp upstream