rs33688585 SNP Detail

Summary

• ID
  rs33688585
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:83479035 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAAAGCTGCT TTATTTGTCT CAGATAAGTA TTAGTACCTT
  TTATGCAACT GAGAACAGGC ACAAAGATTA AATACATTGT CCAAGGTTAC TGAACTGGCA
  W
  TCAGGAAGCC AGGTTTAAAC CCAGCAAGTA GGGCCCCAAG TCTTTGCTCT CAACCACTTT
  GTATAGTGCT TCACTGTTGT AAATCTTCTA ATTCAGAAA                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45309333	mCV23818400	ABI	CRAMUS_MOUSE	f	SNP	A	T	A	T
ss146812198	ENSMUSSNP895543	ENSEMBL	ENSEMBL_Sanger	f	SNP		T
ss320367683	CHEV_2_83488848	CHEVERUD	SCREENING_POP	f	SNP					A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33688585					SNP	A	T	A	T	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:83479035 () rs orientation: forward

Symbol	Name	Function Class
Rr397084	regulatory region 397084	123 bp upstream
Zc3h15	zinc finger CCCH-type containing 15	within coordinates