rs33689416 SNP Detail

Summary

• ID
  rs33689416
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:154493684 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATCACAGGCT CAACAGAGCT CCCCAGGGAC ACTGCTGCAC
  GGGAACCCAA ATCTGCCTCA GCAGCTATTG ACAGGAAAGA GTCCTAAAGC ACTGGAGACC
  K
  GAAGCAGCTG CAGGGTCACT GTGCCCCCAG CTACTCAGAG CACATGCAAG TTGCAAGAAC
  TAGTGAAGAC TCTAGCATGC ATTCTGGAGC CATTTTTAC                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49515694	NES12865433	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	T	G	G	G		G	G	G	T
ss145765781	ENSMUSSNP869524	ENSEMBL	ENSEMBL_Sanger	f	SNP								T				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33689416					SNP	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49515694	NES12865433	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:154493684 () rs orientation: forward

Symbol	Name	Function Class
Cacna1e	calcium channel, voltage-dependent, R type, alpha 1E subunit	Intron
Rr396402	regulatory region 396402	113 bp downstream
Rr420845	regulatory region 420845	within coordinates
Rr420846	regulatory region 420846	1044 bp proximal