rs33689422 SNP Detail

Summary

• ID
  rs33689422
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:154492440 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCGACAGATA CAGCAACCTA
  ACTGACTCTT CCAGCATGGT TCATTTTCGG GGGACATGTA CTATCAAAGT CTTGAACCTG
  TGCACACAAG AGGTGTAGCA TGCCTCATGC CCTTTTAATT CTGCCTTTGC TTCCATATTG
  TTAAGGAAGC TGATGATAGC TCTGATGATA GAAGAGATAC CCTCAAAGGC ATGTGGGGTA
  Y
  ATACCAAGAT CATTCAGATG TACATGGAGT CCCATGGGAA GGAACCCAAG CTACTACACT
  TACTTTTGTC TCTAATCACT GAGAAACGTG TTTTTTATAA AACTATTCTA TTGCGGCTTT
  GTTTTATATT ATCAATGAAA TGATCAAAAA AGGTCATGAT ATTTTAAGGT TTTGTACACA
  AAGAAAGGAG AATGATACTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49515703	NES12865423	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33689422					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49515703	NES12865423	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:154492440 () rs orientation: forward

Symbol	Name	Function Class
Cacna1e	calcium channel, voltage-dependent, R type, alpha 1E subunit	Intron
Rr396402	regulatory region 396402	830 bp upstream
Rr420845	regulatory region 420845	1100 bp proximal