rs33690055 SNP Detail

Summary

• ID
  rs33690055
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:129143765 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAATA TAAATGGCAC CAGCACCCTG
  Y
  ACCCTCTGAA AGCCTTTGGT GGCTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss45309252	mCV23184305	ABI	CRAMUS_MOUSE	f	SNP	T	C	C
ss147586241	ENSMUSSNP6366748	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs33690055					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:129143765 () rs orientation: forward

Symbol	Name	Function Class
Gm14023	predicted gene 14023	within coordinates
Il1a	interleukin 1 alpha	within coordinates
Rr564905	regulatory region 564905	1284 bp distal
Tssr20111	transcription start site region 20111	1401 bp downstream
Tssr26200	transcription start site region 26200	1977 bp upstream
Tssr26201	transcription start site region 26201	1858 bp upstream
Tssr26202	transcription start site region 26202	1795 bp upstream
Tssr26203	transcription start site region 26203	1773 bp upstream
Tssr26204	transcription start site region 26204	1668 bp upstream
Tssr26205	transcription start site region 26205	1615 bp upstream
Tssr26206	transcription start site region 26206	1583 bp upstream
Tssr26207	transcription start site region 26207	1505 bp upstream
Tssr26208	transcription start site region 26208	1277 bp upstream
Tssr26209	transcription start site region 26209	1196 bp upstream
Tssr26210	transcription start site region 26210	1079 bp upstream
Tssr26211	transcription start site region 26211	942 bp upstream
Tssr26212	transcription start site region 26212	899 bp upstream
Tssr26213	transcription start site region 26213	296 bp upstream
Tssr26214	transcription start site region 26214	1110 bp downstream
Tssr26215	transcription start site region 26215	1133 bp downstream
Tssr26216	transcription start site region 26216	1919 bp downstream
Tssr26217	transcription start site region 26217	1949 bp downstream