rs33690098 SNP Detail

Summary

• ID
  rs33690098
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:154937591 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCACACCTCA GAAAGGTGCA GCTAAAGGCT GAGGAGATGC
  CTAGAAACCT GGCCAGGCAG GGGGGCTTAT TTCTGAGTGG ACTCTGAGAG CAGTACCTTC
  R
  GGAAGAGATG CTGCTCCCAA GGAAAGCGTT TGCCAAACAC AGAAAAGAAG CTCAACTCCA
  AAGCCTCCAG AGAAATGCAA AGCAGTGGCC TTGTCATCA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49516940	NES12844572	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A	A	G	G	A	A	A	A	A	A	G
ss145774588	ENSMUSSNP379118	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A						G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33690098					SNP	A	A	A	A	A	A	A	G	G	A	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49516940	NES12844572	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:154937591 () rs orientation: forward

Symbol	Name	Function Class
Cpgi880	CpG island 880	1958 bp distal
Gm9530	predicted gene 9530	1602 bp downstream
Gm41980	predicted gene, 41980	1511 bp upstream
Gm51651	predicted gene, 51651	within coordinates
Rr396410	regulatory region 396410	1986 bp downstream
Rr420927	regulatory region 420927	1763 bp distal
Rr420928	regulatory region 420928	678 bp distal
Rr420929	regulatory region 420929	224 bp proximal
Rr420930	regulatory region 420930	1843 bp proximal
Tssr9522	transcription start site region 9522	1899 bp downstream
Tssr9523	transcription start site region 9523	456 bp upstream