rs33690101 SNP Detail

Summary

• ID
  rs33690101
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:154937216 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGTCCCCTCC GAAGCTGAGC AGGTCTGGAA CCACAACACA
  CTTGCCCTTT CGGGGAGCAG GTTGGGGCAC CTCTACTTTG CCATCAGAGT TACAGAATGT
  Y
  CCCCTAGAGC GTCTAACCCA TGCTCTTCAA ATGGCTTTAA TGGTGGGAGG GAGAAAACCA
  ACCCCCTGTG GACTCGGTTG ATGTTAAATG GTCCTACAT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49516943	NES12844566	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T	C	C	T	T	T	T	T	T	C
ss145774576	ENSMUSSNP5025851	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33690101					SNP	T	T	T	T	T	T	T	C	C	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49516943	NES12844566	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:154937216 () rs orientation: forward

Symbol	Name	Function Class
Cpgi880	CpG island 880	1583 bp distal
Gm9530	predicted gene 9530	1977 bp downstream
Gm41980	predicted gene, 41980	1136 bp upstream
Gm51651	predicted gene, 51651	within coordinates
Gm70900	predicted gene, 70900	1878 bp upstream
Rr396410	regulatory region 396410	1611 bp downstream
Tssr248	transcription start site region 248	1940 bp upstream
Tssr9521	transcription start site region 9521	1760 bp downstream
Tssr9522	transcription start site region 9522	1524 bp downstream
Tssr9523	transcription start site region 9523	831 bp upstream
Tssr14331	transcription start site region 14331	1925 bp upstream
Tssr14332	transcription start site region 14332	1913 bp upstream
Tssr14333	transcription start site region 14333	1895 bp upstream