rs33690103 SNP Detail

Summary

• ID
  rs33690103
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:154936981 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TAAGTACTCA CTAAACAGCA GTTAATTAAG GTCACTTCTA
  TACCTGCCCG AGGTAGCTCA GACAAGCCAG CTGTGAGCCT GTCTGCGGAC ACGTGTGAAC
  R
  GCCATCACCT GCCTACTTAG CTCAATCCAT TTTCAGTTTC ACCTGGTGAC CTTGAAGATT
  TTCTGAGCCA CCACGGCCTG ACCCTCCTCA AGGTGAACA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49516945	NES12844562	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A	A	G	G	A	A	A	A	A	G
ss145774549	ENSMUSSNP6024229	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A						G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33690103					SNP	A	A	A	A	A	A	A	G	G	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49516945	NES12844562	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:154936981 () rs orientation: forward

Symbol	Name	Function Class
Cpgi880	CpG island 880	1348 bp distal
Gm41980	predicted gene, 41980	901 bp upstream
Gm51651	predicted gene, 51651	within coordinates
Gm70900	predicted gene, 70900	1643 bp upstream
Rr396410	regulatory region 396410	1376 bp downstream
Tssr248	transcription start site region 248	1705 bp upstream
Tssr9521	transcription start site region 9521	1525 bp downstream
Tssr9522	transcription start site region 9522	1289 bp downstream
Tssr9523	transcription start site region 9523	1066 bp upstream
Tssr14331	transcription start site region 14331	1690 bp upstream
Tssr14332	transcription start site region 14332	1678 bp upstream
Tssr14333	transcription start site region 14333	1660 bp upstream