rs33690312 SNP Detail

Summary

• ID
  rs33690312
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:72714893 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCAGG GATGCCCCGG GTGGTGGGGC
  Y
  GGCCAGGGTT CTCTCCGGAT GCGCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46306799	mCV25312198	ABI	CRAMUS_MOUSE	f	SNP	T	C	T	C
ss136623966	ENSMUSSNP6768339	ENSEMBL	ENSEMBL_Sanger	f	SNP		C		C
ss323003008	CHEV_9_72655418	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33690312					SNP	T	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:72714893 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22020	CpG island 22020	within coordinates
Prtg	protogenin	within coordinates
Rr206710	regulatory region 206710	within coordinates
Tssr86048	transcription start site region 86048	460 bp downstream
Tssr86049	transcription start site region 86049	435 bp downstream
Tssr86050	transcription start site region 86050	391 bp downstream
Tssr86051	transcription start site region 86051	329 bp downstream
Tssr86052	transcription start site region 86052	297 bp downstream
Tssr86053	transcription start site region 86053	260 bp downstream