rs33690510 SNP Detail

Summary

• ID
  rs33690510
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:155094956 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGGTGTGGCT CTCTGGTGGC ATACTAAGAC ACACCTTAGA
  GCAGGACGGG TCCAGCTAGG AGTGGGGGTG AGCCAGGTAA CGTGACAGCT CCAGGAGCTT
  W
  TAACTGGGAG CAGAGAGGCT TTGCCCAAGA AGGCAGGCTG ACAGAGGCAG GCTGGTCCTT
  GAGTGAGGCT GGAAGCAAGA GCTCACCAGC TGGAAGAAA                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss49516463	NES12835904	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	A	T	T	A	T	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs33690510					SNP	T	T	T	T	T	T	A	A	T	T	A	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49516463	NES12835904	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:155094956 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
BC034090	cDNA sequence BC034090			Intron
				Noncoding-Transcript-Variant
Rr420975	regulatory region 420975			2000 bp distal
Rr420977	regulatory region 420977			1148 bp distal
Rr420978	regulatory region 420978			811 bp distal
Rr420979	regulatory region 420979			within coordinates