rs33690622 SNP Detail

Summary

• ID
  rs33690622
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:130411730 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGAG AAGAGGGTCC TACACCTGAT
  K
  GTAGCATCCT AGGGAGGGTC TGAGG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45810094	mCV25037326	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	T
ss144481271	ENSMUSSNP5619355	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33690622					SNP	G	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:130411730 () rs orientation: forward

Symbol	Name	Function Class
A330070K13Rik	RIKEN cDNA A330070K13 gene	within coordinates
Caln1	calneuron 1	within coordinates
Rr621523	regulatory region 621523	1469 bp proximal
Rr621524	regulatory region 621524	1748 bp proximal
Tssr49063	transcription start site region 49063	1676 bp upstream
Tssr49064	transcription start site region 49064	1803 bp upstream
Tssr49065	transcription start site region 49065	1829 bp upstream