rs33690873 SNP Detail

Summary

• ID
  rs33690873
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:32902635 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGGG GGGGTGGGTG GTACAGGTGT
  R
  CTCTCCGGTT TGTGCACACC TCCTA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45809995	mCV22741287	ABI	CRAMUS_MOUSE	f	SNP	G	A	A
ss148203959	ENSMUSSNP6426191	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
ss321505774	CHEV_5_33087939	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33690873					SNP	G	A	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:32902635 () rs orientation: forward

Symbol	Name	Function Class
Gm71279	predicted gene, 71279	1193 bp upstream
Pisd	phosphatidylserine decarboxylase	within coordinates
Rr609420	regulatory region 609420	474 bp proximal
Rr609421	regulatory region 609421	1011 bp proximal
Rr609422	regulatory region 609422	1204 bp proximal
Tssr45794	transcription start site region 45794	828 bp upstream
Tssr45795	transcription start site region 45795	1230 bp upstream
Tssr50589	transcription start site region 50589	981 bp downstream
Tssr50590	transcription start site region 50590	1026 bp downstream
Tssr50591	transcription start site region 50591	1052 bp downstream