rs33690927 SNP Detail

Summary

• ID
  rs33690927
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:154934876 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGACTGTGAA TGGGGGAGCC AGGAGTCCTT GGTATCCAGA
  CAGCTCTCTT CTCAGGGGAA GGATGAATGG GTCTCTGCTT TCTCCCAGGC AGAGTTTGCC
  R
  GGCCTTGTGA GCCAGAGTGT CTCCTCCCCT GGCCTCCTGG CTAGGCTCTA ATTCTGCCTC
  CGTTGTCAGG GCAGGTCTGG GAAGGATGAG GGAATTGTCC                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49516951	NES12844735	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33690927					SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49516951	NES12844735	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:154934876 () rs orientation: forward

Symbol	Name	Function Class
Cpgi880	CpG island 880	532 bp proximal
Gm29282	predicted gene 29282	1951 bp upstream
Gm41980	predicted gene, 41980	within coordinates
Gm51651	predicted gene, 51651	within coordinates
Gm70900	predicted gene, 70900	within coordinates
Rr372279	regulatory region 372279	1833 bp downstream
Rr396410	regulatory region 396410	428 bp upstream
Tssr248	transcription start site region 248	393 bp downstream
Tssr9521	transcription start site region 9521	556 bp upstream
Tssr9522	transcription start site region 9522	814 bp upstream
Tssr14331	transcription start site region 14331	404 bp downstream
Tssr14332	transcription start site region 14332	418 bp downstream
Tssr14333	transcription start site region 14333	428 bp downstream