rs33690929 SNP Detail

Summary

• ID
  rs33690929
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:154933168 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCTGACTGCA CAGGGCAGGA CCAGCTCCTT CACACTTCTG
  TTACCTCCCC TTCCCCACCA CAATGGAGTG TCCGTTCCAA GCGTAAGATG GGAGGGCATC
  R
  TAAGGATGGA GATCTCACGA TGCAGAAACC GGGGGGGGGG GGGCGTGAAA GGCATGGAGA
  AGGAGGGCCT AAAGCCCCAA GCAAAGGGGC TCCTCCTGG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49516956	NES12844785	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33690929					SNP	G	G	G	G	G	G	A	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49516956	NES12844785	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:154933168 () rs orientation: forward

Symbol	Name	Function Class
Gm29282	predicted gene 29282	243 bp upstream
Gm41980	predicted gene, 41980	within coordinates
Gm51651	predicted gene, 51651	within coordinates
Gm70900	predicted gene, 70900	1575 bp downstream
Gm71001	predicted gene, 71001	1763 bp downstream
Rr372279	regulatory region 372279	125 bp downstream