CAAGAGAGAA AAATGTCAGG GGACACAAGG GCTTAAGGGA GGTGACAAAG AAAGATAGGT ACAACACAGC AGCCTGTCCC ACTTCCTACA CATAGTCCCA Y GGAAGTCTCG AGGTGTCACT ACAAAGCCAG AAGAAAATGT GAGGGTTATA CAATCTCTGC TCACCACTCC CTCGCACATC TGTTGGCACA CGGGGCAGA Y = C/T Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss49516960 | NES12844813 | PERLEGEN | MM_PANEL2 | f | SNP | T | T | T | T | T | T | C | C | T | T | T | T | T | T | C |
SNP Consensus Information | ||||||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
||||
rs33690933 | SNP | T | T | T | T | T | T | C | C | T | T | T | T | T | T | C |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss49516960 | NES12844813 | PERLEGEN | MM_PANEL | f | SNP | C/T |
Location: Chr1:154932644 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Gm29282 | predicted gene 29282 | within coordinates | ||||||
Gm41980 | predicted gene, 41980 | within coordinates | ||||||
Gm51651 | predicted gene, 51651 | within coordinates | ||||||
Gm71001 | predicted gene, 71001 | 1239 bp downstream | ||||||
Rr372279 | regulatory region 372279 | within coordinates | ||||||
Tssr9520 | transcription start site region 9520 | 1883 bp downstream | ||||||
Tssr14330 | transcription start site region 14330 | 1713 bp upstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 12/17/2024 MGI 6.24 |
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