rs33691974 SNP Detail

Summary

• ID
  rs33691974
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:154930948 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GACAGGAAGT ATTCTAAAGG AGTATGCTAC AGAAAGCCGT
  GCCTGTTCAC AAGCAAGGAC TGAAGAAATA ACCCACTGGA GCTGAGGTTG AAAACAACTC
  Y
  GGGTTTTTAA AGCCTTACTA CTGTAACCTG AGACTTCCCA GACCCTGCGA GAACAATAGA
  AGCCCATATT GAACCCCTTC TGAATTACCC ACTGCCAAGC                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	DBA/2J	MOLF/EiJ	WSB/EiJ
ss49516961	NES12844979	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	DBA/2J	MOLF/EiJ	WSB/EiJ
rs33691974					SNP	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49516961	NES12844979	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:154930948 () rs orientation: forward

Symbol	Name	Function Class
Gm29282	predicted gene 29282	within coordinates
Gm41980	predicted gene, 41980	within coordinates
Gm51651	predicted gene, 51651	1322 bp upstream
Gm71001	predicted gene, 71001	within coordinates
Rr372279	regulatory region 372279	within coordinates
Tssr247	transcription start site region 247	422 bp upstream
Tssr9520	transcription start site region 9520	187 bp downstream
Tssr14327	transcription start site region 14327	441 bp upstream
Tssr14328	transcription start site region 14328	391 bp upstream
Tssr14329	transcription start site region 14329	338 bp upstream
Tssr14330	transcription start site region 14330	17 bp upstream