rs33692023 SNP Detail

Summary

• ID
  rs33692023
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:56748762 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGGG GCAACACCAG CCTTGGTCCT
  Y
  GGCACGCTCC AGCTGGCTCT GGTCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss39566612	mCV22728948	ABI	CRAMUS_MOUSE	f	SNP	T	C	C
ss145807281	ENSMUSSNP2237957	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs33692023					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:56748762 () rs orientation: forward

Symbol	Name	Function Class
Ptprs	protein tyrosine phosphatase receptor type S	within coordinates
Rr405382	regulatory region 405382	1799 bp upstream
Rr529080	regulatory region 529080	1108 bp distal
Rr529081	regulatory region 529081	643 bp proximal
Rr529082	regulatory region 529082	1299 bp proximal
Tssr148802	transcription start site region 148802	1530 bp upstream
Tssr148803	transcription start site region 148803	174 bp downstream