rs33692064 SNP Detail

Summary

• ID
  rs33692064
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:155093405 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGGCTGGCCT ACAAGGAGAC CAAAGACAGT AACGGTAGGG
  TTAGGTATCA CAGCCAGTTT TTTCTGGGCC CTAAGGTGAC CTGAATCTGA TGTAGGAACC
  K
  TTCTGACAGG AGGGGCTGGT TTCTCTGACC TCAGCCAGCA AAATGAGCTC CCTAGGGTGG
  AGACTGGCAG TGTCCACGTC TACTGGCGGT TGGTTTCTC                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49516477	NES12836314	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	G	T	T	G	T	T	T	G
ss145777633	ENSMUSSNP5410272	ENSEMBL	ENSEMBL_Sanger	f	SNP		T						G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33692064					SNP	T	T	T	T	T	T	G	G	T	T	G	T	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49516477	NES12836314	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:155093405 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
BC034090	cDNA sequence BC034090			Intron
				Noncoding-Transcript-Variant
Rr420975	regulatory region 420975			449 bp distal
Rr420977	regulatory region 420977			382 bp proximal
Rr420978	regulatory region 420978			719 bp proximal
Rr420979	regulatory region 420979			1375 bp proximal