rs33692473 SNP Detail

Summary

• ID
  rs33692473
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:41491412 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGACT AGGTATGGTG ATGACGGTCT
  R
  GCTTTTCGGA GAGCAAAAGG GAGAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46306544	mCV23834250	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	A
ss136358663	ENSMUSSNP261264	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		A
ss322927318	CHEV_9_41388199	CHEVERUD	SCREENING_POP	f	SNP					A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33692473					SNP	A	A	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:41491412 () rs orientation: forward

Symbol	Name	Function Class
Gm28119	predicted gene 28119	1792 bp upstream
Gm51670	predicted gene, 51670	845 bp upstream
Gm69589	predicted gene, 69589	within coordinates
Mir100hg	Mir100 Mirlet7a-2 Mir125b-1 cluster host gene	within coordinates
Mir125b-1	microRNA 125b-1	1810 bp upstream
Rr677060	regulatory region 677060	612 bp distal
Rr677061	regulatory region 677061	128 bp distal
Rr677062	regulatory region 677062	133 bp proximal
Rr677063	regulatory region 677063	1236 bp proximal
Rr677064	regulatory region 677064	1350 bp proximal
Rr677065	regulatory region 677065	1566 bp proximal
Rr677066	regulatory region 677066	1897 bp proximal
Tssr84512	transcription start site region 84512	447 bp downstream
Tssr84513	transcription start site region 84513	399 bp downstream
Tssr84514	transcription start site region 84514	224 bp downstream
Tssr84515	transcription start site region 84515	149 bp downstream
Tssr84516	transcription start site region 84516	125 bp downstream
Tssr84517	transcription start site region 84517	99 bp downstream
Tssr84518	transcription start site region 84518	587 bp upstream
Tssr84519	transcription start site region 84519	635 bp upstream
Tssr84520	transcription start site region 84520	787 bp upstream
Tssr84521	transcription start site region 84521	828 bp upstream
Tssr84522	transcription start site region 84522	852 bp upstream
Tssr84523	transcription start site region 84523	950 bp upstream
Tssr84524	transcription start site region 84524	1131 bp upstream
Tssr84525	transcription start site region 84525	1184 bp upstream
Tssr84526	transcription start site region 84526	1215 bp upstream
Tssr84527	transcription start site region 84527	1884 bp upstream
Tssr88995	transcription start site region 88995	593 bp upstream
Tssr88996	transcription start site region 88996	553 bp upstream
Tssr88997	transcription start site region 88997	670 bp downstream