rs33693724 SNP Detail

Summary

• ID
  rs33693724
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:7014977 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGCAGCAG TTGGTTAGAT
  GTGAGTGTGT AACTCACATG TTCTTGGACG GGGAGACCTA AGCAAACCTC TTCATTTAAA
  ATACAAAGCG AGTCCAGGAG ACATAATTAA TAAAATCACC ATGTTTAAAC AGTCTTTAAC
  CCTCCCAGGT TCAACCAAAT GGTGCAGCCA GGTTTTAGTT CTCAGCATCA GGCAGCTGTG
  M
  GGCATCACCC TGGGTCACCG ACTCTTACGT CGGAAAGCTC TTTTGTCCTA TTTGACCTTC
  TTCCCCCACA TGCCTACCCT GCCCAGCTTC TCATGCGGCC AGAGCCCCCA CTGCTGTTCT
  GGTCTGATTA ATTCCCTGTC AGCCAGCCAG AGCTCTCTTC AGATATGTCA GCAGAGTCTA
  CTCACAGCTC TAAAACTACA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48344180	NES12258401	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33693724					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48344180	NES12258401	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:7014977 () rs orientation: forward

Symbol	Name	Function Class
Ezr	ezrin	within coordinates
Rr332780	regulatory region 332780	1377 bp distal
Rr342727	regulatory region 342727	within coordinates
Rr370167	regulatory region 370167	1879 bp downstream
Tssr142477	transcription start site region 142477	1286 bp downstream
Tssr142478	transcription start site region 142478	1262 bp downstream
Tssr146322	transcription start site region 146322	1549 bp upstream
Tssr146323	transcription start site region 146323	758 bp upstream
Tssr146324	transcription start site region 146324	710 bp upstream
Tssr146325	transcription start site region 146325	686 bp upstream