rs33693727 SNP Detail

Summary

• ID
  rs33693727
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:7013702 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTAAAGAAC TGTGTGAGTG
  GAGAGGGAGT CACGGGTTTA CAAACAGCAG GAGACATTTC AATAAAGAAA ATACTTTCAC
  AAGCCAAGCG GAGACCTGCT GACTTTACAG TTCCGACAGA CAGCCCGGCC CACTTGCGGG
  GAAGTGACGG TTGGTTGGTA ACACTGAGTG CTCCAAGTGT GTTTACCATT TCCAAGGGGT
  K
  CTCAGCCCTA AGAGGCTTAG CAGGCATCGT GGTGTGGACA CAGTCCGTGC TGGTCTCTCT
  AGGCTTACCA CTGTAACTAG GGAACAAGAA GACTCGGGGA CCCAAAGTCT TTCCCAATCT
  ATAACTGTGG TACAAGCCAG AGGAAGCTCT TTAAAAATTA TACTTAAAAA AACAAAACCA
  AGAAAAGAGA GTTCTGGCTA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss48344183	NES12258398	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs33693727					SNP	T	T	T	T	T	T	T	T	T	T	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48344183	NES12258398	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:7013702 () rs orientation: forward

Symbol	Name	Function Class
Ezr	ezrin	within coordinates
Rr332780	regulatory region 332780	102 bp distal
Rr342727	regulatory region 342727	within coordinates
Rr370167	regulatory region 370167	604 bp downstream
Tssr142477	transcription start site region 142477	11 bp downstream
Tssr142478	transcription start site region 142478	6 bp upstream
Tssr146322	transcription start site region 146322	274 bp upstream
Tssr146323	transcription start site region 146323	510 bp downstream
Tssr146324	transcription start site region 146324	556 bp downstream
Tssr146325	transcription start site region 146325	584 bp downstream