rs33693732 SNP Detail

Summary

• ID
  rs33693732
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:7012543 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCCCTGGG GAAGGATGGA
  GTGTCACCGC CTCCTTGTCA CCCCTCAGCT CCCGAACTAA TGCTGCCTCT GCGTTTGTGC
  CTACATTGAG AGGCCCGGCT ACCCTCCTCT CCTCCCCTCA GCGTCACTTT TCGTCTGAGG
  GTGTTGCTAG ATCCACCCTG AGAATCCTCC TCTTTGCCTG GTCTCATCGC TTTTCCCACC
  R
  CAATGCAGAA CTGCGACTGT CTGTGGCCAC AGGTCAGTCC TGGAACACCG GGCTCCTGGG
  GTGCATGGGC GATGTGTGTG TGCCGCAGGC TCCTGGGGTG CATGGGCGAT GTGTGTGTGT
  GTGCCGCAGG CTCCTGGGGT GCATGGGCGA TGTGTGTGTG TGTGTGCCGC AGGCTCCTGG
  GGTGCATGGG CGATGTGTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48344188	NES12258566	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33693732					SNP	G	G	G	G	G	G	A	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48344188	NES12258566	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:7012543 () rs orientation: forward

Symbol	Name	Function Class
Ezr	ezrin	within coordinates
Rr332780	regulatory region 332780	658 bp proximal
Rr342727	regulatory region 342727	within coordinates
Rr370167	regulatory region 370167	354 bp upstream
Tssr4995	transcription start site region 4995	1856 bp downstream
Tssr142477	transcription start site region 142477	1142 bp upstream
Tssr142478	transcription start site region 142478	1165 bp upstream
Tssr146320	transcription start site region 146320	1324 bp upstream
Tssr146321	transcription start site region 146321	1298 bp upstream
Tssr146322	transcription start site region 146322	847 bp downstream
Tssr146323	transcription start site region 146323	1669 bp downstream
Tssr146324	transcription start site region 146324	1715 bp downstream
Tssr146325	transcription start site region 146325	1743 bp downstream