rs33693733 SNP Detail

Summary

• ID
  rs33693733
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:7012320 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAAAGAAACC CTACACCCTC TTACCTCCAG GGTTTCTGCT
  GTCTTTTATA TTATAGTCTA ACCTTAAAAA TGTGGTTTGC TTATGTCCAA AGTAAAATAC
  Y
  GGGATTAGGC ATGGCCACTC CTCAGCCCTG GGGAAGGATG GAGTGTCACC GCCTCCTTGT
  CACCCCTCAG CTCCCGAACT AATGCTGCCT CTGCGTTTGT                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48344189	NES12258565	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33693733					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48344189	NES12258565	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:7012320 () rs orientation: forward

Symbol	Name	Function Class
Ezr	ezrin	within coordinates
Rr332780	regulatory region 332780	881 bp proximal
Rr342727	regulatory region 342727	within coordinates
Rr370167	regulatory region 370167	577 bp upstream
Tssr4995	transcription start site region 4995	1633 bp downstream
Tssr142477	transcription start site region 142477	1365 bp upstream
Tssr142478	transcription start site region 142478	1388 bp upstream
Tssr146320	transcription start site region 146320	1101 bp upstream
Tssr146321	transcription start site region 146321	1075 bp upstream
Tssr146322	transcription start site region 146322	1070 bp downstream
Tssr146323	transcription start site region 146323	1892 bp downstream
Tssr146324	transcription start site region 146324	1938 bp downstream
Tssr146325	transcription start site region 146325	1966 bp downstream