rs33693784 SNP Detail

Summary

• ID
  rs33693784
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:154976016 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAAGGGAACG TTCTAGAAAT ACCCAAGCTT CTGCCTTATG
  AAGGAACAGA ATTCAGGTAC AACGTTGTTT GTTCTCACCT AAAGCTGGCA TCTTTCATTT
  Y
  GTTCCCCAGA TTCTCAGTTA TCACATATTT TAAATGGAAG ATGTTACCTA TTTCTCCACA
  ATGGTTTTCT TTGTTTGTCT GTTTGTTTAA TACCCCCCC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss49516895	NES12843071	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	T	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs33693784					SNP	C	C	C	C	C	C	C	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49516895	NES12843071	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:154976016 () rs orientation: forward

Symbol	Name	Function Class
Cpgi882	CpG island 882	414 bp distal
Gm69473	predicted gene, 69473	within coordinates
Gm69486	predicted gene, 69486	within coordinates
Ier5	immediate early response 5	634 bp upstream
Rr28750	regulatory region 28750	215 bp distal
Rr396412	regulatory region 396412	396 bp downstream
Tssr9527	transcription start site region 9527	1974 bp downstream
Tssr14336	transcription start site region 14336	1524 bp upstream
Tssr14337	transcription start site region 14337	789 bp upstream
Tssr14338	transcription start site region 14338	726 bp upstream
Tssr14339	transcription start site region 14339	637 bp upstream