rs33693927 SNP Detail

Summary

• ID
  rs33693927
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:49012440 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CAGAGGCAGA GGCAGAGGCA GAGGCAGAGG CAGAGGCAGA GGCAGAGGCA GAGGCAGAGG
  CAGAGGCAGA GGCAGAGGCA GAGGCAGAGG CAGAGAGGCA GAGGCAGAGG CAGAGGCAGG
  AGGCAGGAGG CAGGAGGCAG GAGGCAGGAG GCAGGAGGCA GAGGCAGTGG AGTGCTATGT
  GCTCAGGACT GGCCTGGTTT TATGTAAATA GCGACAAGTC ATTTAAAACT ACATTTCTCA
  AAAAAAAAAA AAAAAAAAAA AAGCCAGGAA AAAAGAGAAC CAGAAGAGCA GCTGGGACCC
  K
  GGCAGCTAGA GGAGAAGCTG ATGATAGTTA ATACGATTAG TGGCGCCTTT ATGTGCCCAC
  GTTAGCAAAG CCTAAGAAGA AAACACAGGC AAAATACAGG TAGGGCTGGC AGTTCAGAGT
  GCTTCCTGTG CTTGCAGAGG ACCTCAGTTC AGTTCCCAGC ACCCCACACT GTGGGGCTCA
  CAACCACGTG TAACTCCAGC TCCAAAGGAC CAGACACCCT CTTCTGGCCT GTGTAGCACC
  TGCATACACA TAGCATTTAC TTATACAGAC ACGTATGTGG GCATAAACCT TAAAAAGAAT
                                                                   
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss46306930	mCV25370054	ABI	CRAMUS_MOUSE	f	SNP	T	G	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs33693927					SNP	T	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:49012440 () rs orientation: forward

Symbol	Name	Function Class
Rr678512	regulatory region 678512	1160 bp proximal
Tmprss5	transmembrane protease, serine 5 (spinesin)	1554 bp upstream
Tssr85008	transcription start site region 85008	1580 bp upstream