rs33693987 SNP Detail

Summary

• ID
  rs33693987
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:25113557 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGAG ACACTCACAT TGCTGGGGGC
  Y
  GGGTCGGGCC TGACAACGTT CCACT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39567203	mCV25252085	ABI	CRAMUS_MOUSE	f	SNP	C	T	C	T
ss145369195	ENSMUSSNP1638754	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T		T
ss325334803	CHEV_17_25031528	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33693987					SNP	C	T	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:25113557 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8748	CpG island 8748	within coordinates
Eme2	essential meiotic structure-specific endonuclease subunit 2	within coordinates
Mrps34	mitochondrial ribosomal protein S34	537 bp upstream
Nme3	NME/NM23 nucleoside diphosphate kinase 3	1917 bp upstream
Rr339337	regulatory region 339337	within coordinates
Tssr143113	transcription start site region 143113	534 bp upstream
Tssr143114	transcription start site region 143114	936 bp upstream
Tssr143115	transcription start site region 143115	1905 bp upstream
Tssr143116	transcription start site region 143116	1952 bp upstream
Tssr146794	transcription start site region 146794	464 bp downstream
Tssr146795	transcription start site region 146795	877 bp downstream