rs33694139 SNP Detail

Summary

• ID
  rs33694139
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:43877842 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGGGA GTTTAGCAAG GCAAAAGAAT
  R
  AACAAACATC ATGGGATTGC AAGTT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss39567590	mCV25104672	ABI	CRAMUS_MOUSE	f	SNP		A					G		A
ss62747696	NES17340477	PERLEGEN	MM_PANEL2	f	SNP	A	A	G	A	A	G		G	A	G	A		G	A	G	G		G
ss145670503	ENSMUSSNP6570528	ENSEMBL	ENSEMBL_Sanger	f	SNP		A							A
ss325395750	CHEV_17_43703900	CHEVERUD	SCREENING_POP	f	SNP												A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33694139					SNP	A	A	G	A	A	G	G	G	A	G	A	A	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62747696	NES17340477	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:43877842 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9171	CpG island 9171	1372 bp proximal
Gm64747	predicted gene, 64747	within coordinates
Pla2g7	phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)	1167 bp upstream
Rr527121	regulatory region 527121	828 bp proximal
Rr527122	regulatory region 527122	1329 bp proximal
Tssr144685	transcription start site region 144685	1036 bp upstream
Tssr144686	transcription start site region 144686	1145 bp upstream
Tssr144687	transcription start site region 144687	1201 bp upstream
Tssr144688	transcription start site region 144688	1339 bp upstream
Tssr144689	transcription start site region 144689	1496 bp upstream
Tssr144690	transcription start site region 144690	1531 bp upstream
Tssr144691	transcription start site region 144691	1551 bp upstream
Tssr144692	transcription start site region 144692	1607 bp upstream
Tssr144693	transcription start site region 144693	1655 bp upstream
Tssr144694	transcription start site region 144694	1690 bp upstream
Tssr144695	transcription start site region 144695	1738 bp upstream
Tssr144696	transcription start site region 144696	1755 bp upstream
Tssr148130	transcription start site region 148130	1553 bp downstream